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Showing :
annotationhub
•
reset
1
vote
4
replies
1.7k
views
Unable to install AnnotationHub
AnnotationHub
written 4 months ago by
Gerhard Thallinger
▴ 180
0
votes
2
replies
880
views
Unable to download AnnotationHub EPICV2 manifest
AnnotationHubData
AnnotationHub
written 4 months ago by
Lynx
• 0
2
votes
2
replies
1.3k
views
Failure to download resources (MeSHDb) from AnnotationHub
MeSHDb
AnnotationHub
12 months ago
Steve Lianoglou
★ 13k
3
votes
3
replies
1.5k
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
igor
▴ 50
0
votes
1
reply
1.5k
views
Help using reduceSimMatrix with a custom annotation
AnnotationHub
GOSemSim
rrvgo
updated 18 months ago by
sergisayolspuig
▴ 80 • written 2.0 years ago by
daccar98
• 0
1
vote
3
replies
2.3k
views
Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malformed error
signac
AnnotationHub
written 20 months ago by
AB
▴ 110
5
votes
13
replies
3.6k
views
Installing annotation package in locally
AnnotationDbi
AnnotationHub
Annotation
AnnotationForge
2.0 years ago
KABILAN
• 0
0
votes
3
replies
2.5k
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub
AnnotationDbi
AnnotationForge
2.3 years ago • updated 2.2 years ago
Anna
• 0
1
vote
5
replies
3.4k
views
EnsDb: bad_weak_ptr
AnnotationHub
BiocFileCache
2.4 years ago
LluÃs Revilla Sancho
▴ 760
0
votes
5
replies
3.1k
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 2.4 years ago by
shepherl
4.4k • written 2.4 years ago by
Mishaal Irfan
• 0
0
votes
0
replies
1.2k
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
2.4 years ago
shepherl
4.4k
1
vote
1
reply
1.4k
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
Tim Barry
• 0
6
votes
12
replies
10k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
3.0 years ago • updated 2.5 years ago
shepherl
4.4k
10
votes
44
replies
14k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
8.0 years ago • updated 5 weeks ago
Guido Hooiveld
★ 4.1k
1
vote
6
replies
2.7k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 2.6 years ago by
Tim Peters
▴ 230 • written 2.6 years ago by
s.malik
• 0
2
votes
1
reply
2.0k
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon
clusterPro
Salmosalar
AnnotationHub
GeneOntology
updated 2.7 years ago by
Michael Love
44k • written 2.7 years ago by
Filipe
• 0
0
votes
1
reply
1.3k
views
Annotatr Duplicate Entries
annotatr
AnnotationHub
written 2.8 years ago by
hayleyw
• 0
2
votes
28
replies
9.2k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub
AnnotationForge
Pseudomonas_aeruginosa
updated 2.9 years ago by
James W. MacDonald
68k • written 3.9 years ago by
Manmohit
▴ 10
3
votes
4
replies
3.8k
views
Annotation hub and clusterProfiler errors
clusterProfiler
Annotationhub
updated 3.0 years ago by
Guido Hooiveld
★ 4.1k • written 3.0 years ago by
BS
• 0
1
vote
2
replies
2.3k
views
AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
3.1 years ago • updated 3.0 years ago
Thon
• 0
0
votes
1
reply
1.9k
views
multiGSEA package in R not appropriately assigning metabolites to pathways?
metaboliteIDmapping
AnnotationHub
multiGSEA
3.8 years ago
Thomas
• 0
2
votes
2
replies
2.0k
views
[BigWigFile] import as RLE vs default and length comparaison
BSgenome.Hsapiens.UCSC.hg19
rtracklayer
AnnotationHub
4.2 years ago
Lenny186
• 0
0
votes
3
replies
4.2k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub
org.Hs.eg.db
ensembldb
4.3 years ago • updated 4.2 years ago
sandmann.t
▴ 70
9
votes
21
replies
18k
views
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub
dplyr
updated 4.3 years ago by
SmallChess
▴ 10 • written 6.0 years ago by
georgia.katsoula
▴ 40
0
votes
2
replies
3.3k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub
Install
updated 4.6 years ago by
shepherl
4.4k • written 4.6 years ago by
nhaus
▴ 80
0
votes
4
replies
2.7k
views
AnnotationHub
AnnotationHub
4.6 years ago
junliqilinpan
• 0
4
votes
6
replies
6.2k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub
OrganismDbi
org.Hs.eg.db
updated 4.7 years ago by
Gordon Smyth
54k • written 4.7 years ago by
Nathan
• 0
9
votes
14
replies
13k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 2.3 years ago by
shepherl
4.4k • written 4.8 years ago by
jon.klonowski
▴ 40
0
votes
2
replies
2.5k
views
AnnotationHub problem
AnnotationHub
4.8 years ago
Jianxuan
• 0
4
votes
8
replies
4.3k
views
Problem converting transcript to genomic coordinates with Annotation Hub
AnnotationHub
4.9 years ago • updated 4.5 years ago
nattzy94
▴ 20
1
vote
3
replies
2.9k
views
How delete the AnnotationHub downloaded datasets
AnnotationHub
updated 5.0 years ago by
Mike Smith
★ 6.6k • written 5.1 years ago by
sabermohammdi.1994
• 0
2
votes
10
replies
5.0k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 5.0 years ago by
Guido Hooiveld
★ 4.1k • written 5.0 years ago by
Javan Okendo
• 0
0
votes
0
replies
1.4k
views
LRBaseDbi error
LRBaseDbi
AnnotationHub
5.2 years ago
Francois Marchildon
▴ 20
1
vote
2
replies
3.7k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb
Bioconductor
AnnotationHub
clusterProfiler
updated 5.5 years ago by
Guido Hooiveld
★ 4.1k • written 5.5 years ago by
ju.ry
• 0
0
votes
1
reply
2.5k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
5.6 years ago
shepherl
4.4k
0
votes
3
replies
8.7k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub
biomaRt
updated 4.2 years ago by
alvea2008667
• 0 • written 5.6 years ago by
rohitsatyam102
▴ 20
3
votes
11
replies
11k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 2.8 years ago by
Guido Hooiveld
★ 4.1k • written 5.8 years ago by
Alberto
• 0
11
votes
13
replies
8.7k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic
AnnotationHub
GenomicRanges
org.Hs.eg.db
5.9 years ago • updated 5.8 years ago
rohitsatyam102
▴ 20
3
votes
2
replies
3.4k
views
Issue with AnnotationHub
AnnotationHub
5.9 years ago
rahnaman
▴ 10
1
vote
2
replies
2.5k
views
How to mimic biomaRt results with AnnotationHub?
biomaRt
AnnotationHub
6.0 years ago
Ezgi
▴ 60
1
vote
3
replies
2.2k
views
AnnotationHub: failed to load resource name
AnnotationHub
6.2 years ago
ben.ponv
• 0
4
votes
17
replies
5.2k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt
annotation
Ensembl
annotationHub
updated 6.2 years ago by
Kevin Blighe
★ 4.0k • written 6.2 years ago by
Didi
▴ 10
4
votes
2
replies
3.2k
views
News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
ensembldb
annotation
AnnotationHub
News
6.2 years ago
Johannes Rainer
★ 2.1k
8
votes
16
replies
11k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 6.3 years ago by
shepherl
4.4k • written 6.3 years ago by
enricoferrero
▴ 680
0
votes
2
replies
2.8k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
2.4k
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
Bogdan
▴ 670
3
votes
6
replies
4.5k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub
OrgDb
snapshotDate
updated 4.3 years ago by
shepherl
4.4k • written 6.5 years ago by
Jenny Drnevich
★ 2.0k
2
votes
8
replies
4.3k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
bnajafpour
• 0
1
vote
5
replies
3.3k
views
AnnotationHub; Error: failed to load resource; Timeout was reached: [annotationhub.bioconductor.org]
annotationhub
updated 6.6 years ago by
shepherl
4.4k • written 6.6 years ago by
dilaik
• 0
0
votes
2
replies
2.2k
views
hg38 tracks for AnnotationHub
annotationhub
6.7 years ago
Michael Love
44k
133 results • Page
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